02 EP tissue / 03C Tuning Wavelength
OpenCarp errors:
- With
--dimension cable
#
Launching CARP Simulation JOBID2
#-----------------------------------------------
------------------------------------------------
/usr/local/bin/openCARP \
+F tuning_wavelength_b10_cable.par \
-ellip_use_pt 0 \
-parab_use_pt 0 \
-parab_options_file /carputils/carputils/resources/petsc_options/ilu_cg_opts \
-ellip_options_file /carputils/carputils/resources/petsc_options/amg_cg_opts \
-simID JOBID2/Tuning_Wavelength_b10 \
-start_statef JOBID2/Tuning_Wavelength_State/statefile.2000.0 \
-imp_region[0].im_param "G_Ks=0.25" \
-gregion[0].g_il 0.3544 \
-gregion[0].g_el 1.27 \
-gregion[0].g_it 0.024 \
-gregion[0].g_et 0.0862 \
-gregion[0].g_in 0.024 \
-gregion[0].g_en 0.0862 \
-tend 3000 \
-stimulus[0].start 2000 \
-stimulus[0].bcl 1000
*** start_statef: Unable to access file JOBID2/Tuning_Wavelength_State/statefile.2000.0.roe
*** No such file or directory
*** start_statef: JOBID2/Tuning_Wavelength_State/statefile.2000.0.roe is not an ordinary file
*** start_statef: Unable to read file JOBID2/Tuning_Wavelength_State/statefile.2000.0.roe
*** No such file or directory
*** Error reading parameters
/usr/local/bin/igbapd --repol=80 --vup=-10 --peak-value=plateau --output-
file=JOBID2/Tuning_Wavelength_b10/apd.dat JOBID2/Tuning_Wavelength_b10/vm.igb
File is not a proper IGB file: JOBID2/Tuning_Wavelength_b10/vm.igb
Traceback (most recent call last):
File "./run.py", line 608, in <module>
run()
File "/carputils/carputils/tools.py", line 499, in wrapped
ret = run(args, job)
File "./run.py", line 334, in run
job.bash(cmd)
File "/carputils/carputils/job/job.py", line 230, in bash
self.register(ShellCommand(cmd, message), *args, **kwargs)
File "/carputils/carputils/job/job.py", line 108, in register
self._queue.pop(0).execute()
File "/carputils/carputils/job/command.py", line 133, in execute
divertoutput.call(self._cmd, stdout=self._stdout, stderr=self._stderr)
File "/carputils/carputils/divertoutput.py", line 43, in wrapped
return func(cmd, *args, **kwargs)
File "/carputils/carputils/divertoutput.py", line 145, in call
raise subprocess.CalledProcessError(proc.returncode, cmd)
subprocess.CalledProcessError: Command '['/usr/local/bin/igbapd', '--repol=80', '--vup=-10',
'--peak-value=plateau', '--output-file=JOBID2/Tuning_Wavelength_b10/apd.dat',
'JOBID2/Tuning_Wavelength_b10/vm.igb']' returned non-zero exit status 1.
- With
--dimension sheet
#
Launching CARP Simulation JOBID
#------------------------------------------------------------------
-------------------------------------------------------------------
/usr/local/bin/openCARP \
+F tuning_wavelength_b10_cable.par \
-ellip_use_pt 0 \
-parab_use_pt 0 \
-parab_options_file /carputils/carputils/resources/petsc_options/ilu_cg_opts \
-ellip_options_file /carputils/carputils/resources/petsc_options/amg_cg_opts \
-simID JOBID/Tuning_Wavelength_b10 \
-start_statef JOBID/Tuning_Wavelength_State/statefile.2000.0 \
-imp_region[0].im_param "G_Ks=0.25" \
-gregion[0].g_il 0.3544 \
-gregion[0].g_el 1.27 \
-gregion[0].g_it 0.024 \
-gregion[0].g_et 0.0862 \
-gregion[0].g_in 0.024 \
-gregion[0].g_en 0.0862 \
-tend 3000 \
-stimulus[0].start 2000 \
-stimulus[0].bcl 1000 \
-meshname ./Mesh_1.5cm_Sheet/mesh \
-stimulus[0].vtx_file ./Mesh_1.5cm_Sheet/stim
*** start_statef: Unable to access file JOBID/Tuning_Wavelength_State/statefile.2000.0.roe
*** No such file or directory
*** start_statef: JOBID/Tuning_Wavelength_State/statefile.2000.0.roe is not an ordinary file
*** start_statef: Unable to read file JOBID/Tuning_Wavelength_State/statefile.2000.0.roe
*** No such file or directory
*** Error reading parameters
/usr/local/bin/openCARP \
+F tuning_wavelength_b10_cable.par \
-ellip_use_pt 0 \
-parab_use_pt 0 \
-parab_options_file /carputils/carputils/resources/petsc_options/ilu_cg_opts \
-ellip_options_file /carputils/carputils/resources/petsc_options/amg_cg_opts \
-simID JOBID/Tuning_Wavelength_b10 \
-start_statef JOBID/Tuning_Wavelength_State/statefile.2000.0 \
-imp_region[0].im_param "G_Ks=0.25" \
-gregion[0].g_il 0.3544 \
-gregion[0].g_el 1.27 \
-gregion[0].g_it 0.024 \
-gregion[0].g_et 0.0862 \
-gregion[0].g_in 0.024 \
-gregion[0].g_en 0.0862 \
-tend 3000 \
-stimulus[0].start 2000 \
-stimulus[0].bcl 1000 \
-meshname ./Mesh_1.5cm_Sheet/mesh \
-stimulus[0].vtx_file ./Mesh_1.5cm_Sheet/stim /usr/local/bin/igbapd \
--repol=80 \
--vup=-10 \
--peak-value=plateau \
--output-file=JOBID/Tuning_Wavelength_b10/apd.dat JOBID/Tuning_Wavelength_b10/vm.igb
*** Unrecognized keyword --repol=80
*** Error reading parameters
Traceback (most recent call last):
File "./run.py", line 608, in <module>
run()
File "/carputils/carputils/tools.py", line 499, in wrapped
ret = run(args, job)
File "./run.py", line 542, in run
job.bash(cmd)
File "/carputils/carputils/job/job.py", line 230, in bash
self.register(ShellCommand(cmd, message), *args, **kwargs)
File "/carputils/carputils/job/job.py", line 108, in register
self._queue.pop(0).execute()
File "/carputils/carputils/job/command.py", line 133, in execute
divertoutput.call(self._cmd, stdout=self._stdout, stderr=self._stderr)
File "/carputils/carputils/divertoutput.py", line 43, in wrapped
return func(cmd, *args, **kwargs)
File "/carputils/carputils/divertoutput.py", line 147, in call
raise subprocess.CalledProcessError(proc.returncode, cmd[0])
subprocess.CalledProcessError: Command '/usr/local/bin/openCARP' returned non-zero exit status 5.