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Option to bundle simulation outputs for archive purposes

Marie Houillon requested to merge bundle into master

What does this MR do?

This MR adds the --bundle-output command line option. This option has to be used in combination with the --bundle option. It allows to add the output produced by a simulation in the simulation bundle, which can be useful to archive the results of a simulation. In practice, the output folder of the simulation and the meshes folder are added to the bundle if they exist, in a folder named sim_outputs.

Related issues

openCARP#65 (closed)

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