Error running Reentry induction protocols example in Docker container
Summary
I have just run the Docker container of openCARP, I have no installed or modified anything in the container, when I am trying to run the Reentry induction protocol located in the folder /openCARP/external/experiments/tutorials/02_EP_tissue/21_reentry_induction, using the command
./run.py --np 2 --protocol prepace --prepace_bcl 500 --prebeats 4
I get the following error
[mpiexec@7bfd652a2bd2] HYDU_create_process (utils/launch/launch.c:74): execvp error on file /usr/local/bin/hydra_pmi_proxy (No such file or directory)
[mpiexec@7bfd652a2bd2] HYD_pmcd_pmiserv_proxy_init_cb (pm/pmiserv/pmiserv_cb.c:448): assert (!closed) failed
[mpiexec@7bfd652a2bd2] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:77): callback returned error status
[mpiexec@7bfd652a2bd2] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:196): error waiting for event
[mpiexec@7bfd652a2bd2] main (ui/mpich/mpiexec.c:336): process manager error waiting for completion
Traceback (most recent call last):
File "./run.py", line 730, in <module>
run()
File "/usr/local/lib/python3.6/dist-packages/carputils/tools.py", line 528, in wrapped
ret = run(args, job)
File "./run.py", line 560, in run
model.prepace.prepace(args, job, cmd, meshname, sinus, steady_state_dir, tissue_init)
File "/usr/local/lib/python3.6/dist-packages/carputils/model/prepace.py", line 93, in prepace
os.rename(old_file, new_file)
FileNotFoundError: [Errno 2] No such file or directory: 'prepace_block_50000.0um_resolution_400.0um_cv_0.3_with_4_beats_at_500.0_bcl_lump_1/vm.igb' -> 'prepace_block_50000.0um_resolution_400.0um_cv_0.3_with_4_beats_at_500.0_bcl_lump_1/vm_prepace.igb'
It seems like an error with the prepace.py protocol
What version of carputils and/or openCARP are you using?
carputils and/or openCARP version installed in Docker container pulled on 16/jan/2022
What operating system and processor architecture are you using?
Docker container pulled on 16/jan/2022 from opencarp.org on
Description: Ubuntu 20.04.3 LTS Release: 20.04 Codename: focal