experiments issueshttps://git.opencarp.org/openCARP/experiments/-/issues2023-04-24T21:43:17Zhttps://git.opencarp.org/openCARP/experiments/-/issues/41Add example loading a custom mesh2023-04-24T21:43:17ZAxel Loeweaxel.loewe@kit.eduAdd example loading a custom meshIt would be great to have an example showing how to load a custom mesh. Potentially starting with a VTK file, conversion with meshtool and then loading the mesh into openCARP and adding a stimulus, maybe also different regions.
As many o...It would be great to have an example showing how to load a custom mesh. Potentially starting with a VTK file, conversion with meshtool and then loading the mesh into openCARP and adding a stimulus, maybe also different regions.
As many openCARP users likely already have such a workflow that could be developed into an example, community contributions are highly welcome!https://git.opencarp.org/openCARP/experiments/-/issues/39Some comments on the "Single-cell APD restitution" experiment2023-01-09T13:00:03ZJoshua SteyerSome comments on the "Single-cell APD restitution" experiment- 1st task: When generating the APD vs. DI plots, the second figure (the one with the two images comparing APD and restitution slope) is not very readable in its standard output size (the x axis description of the upper image overlaps wi...- 1st task: When generating the APD vs. DI plots, the second figure (the one with the two images comparing APD and restitution slope) is not very readable in its standard output size (the x axis description of the upper image overlaps with the headline of the lower one). Only if the figure itself is enlarged, one may read the description better. I'd suggest to automatically adjust the distances, e.g., by setting bbox_inches='tight' or so
- 2nd task: "It should be well above 1.0 and look similar to Figure 5 in the Tusscher2006 paper." -> maybe specify which one is meant specifically, e.g., (5F)
- 2nd task: Even though in the text, 'G_Kr=0.172,G_Ks=0.441,G_pCa=0.8666,G_pK=0.00219,G_tf=2' (so in total five parameters) are to be changed, in the corresponding command line, only GKr=0.172 and GKs=0.441 are set.
- 2nd task: Neither Gtf nor G_tf seem to exist in the tenTusscherPanfilov model (at least according to when running bench --imp=tenTusscherPanfilov --imp-info)https://git.opencarp.org/openCARP/experiments/-/issues/33Video tutorial: build first own experiment2021-10-04T11:33:34ZAxel Loeweaxel.loewe@kit.eduVideo tutorial: build first own experimentBased on https://git.opencarp.org/openCARP/experiments/-/tree/master/tutorials/02_EP_tissue/22_simple
Could be the example from the modeling challenge.
Show openCARP parameter documentation and carputils doxygen documentation in video....Based on https://git.opencarp.org/openCARP/experiments/-/tree/master/tutorials/02_EP_tissue/22_simple
Could be the example from the modeling challenge.
Show openCARP parameter documentation and carputils doxygen documentation in video.
@hermenegild / Simula offered to also contribute some examples.Jorge SanchezJorge Sanchezhttps://git.opencarp.org/openCARP/experiments/-/issues/32Documentation on lookup tables in ionic models2021-10-04T11:19:29ZAxel Loeweaxel.loewe@kit.eduDocumentation on lookup tables in ionic modelsFrom user meeting 2021:
> More information about how lookup tables can be used for ionic models. What should one look out for? Does the model formulation matter for speed or accuracy?
Add to https://git.opencarp.org/openCARP/experiments...From user meeting 2021:
> More information about how lookup tables can be used for ionic models. What should one look out for? Does the model formulation matter for speed or accuracy?
Add to https://git.opencarp.org/openCARP/experiments/-/blob/master/tutorials/01_EP_single_cell/05_EasyML/run.py to be shown on https://opencarp.org/documentation/examples/01_ep_single_cell/05_easymlKristian Gregorius HustadKristian Gregorius Hustadhttps://git.opencarp.org/openCARP/experiments/-/issues/30Example how to visualize fibers2021-09-21T12:30:00ZAxel Loeweaxel.loewe@kit.eduExample how to visualize fibersIt would be nice to add an example demonstrating how to visualize fibers using meshalyzer. The recording of Ed's talk during the 4th openCARP User Meeting can be a good starting point. The video should be online soon.It would be nice to add an example demonstrating how to visualize fibers using meshalyzer. The recording of Ed's talk during the 4th openCARP User Meeting can be a good starting point. The video should be online soon.https://git.opencarp.org/openCARP/experiments/-/issues/2603A_study_prep_tuneCV output inconsistent with web page2020-11-04T15:20:10ZAxel Loeweaxel.loewe@kit.edu03A_study_prep_tuneCV output inconsistent with web pageReported by @rafael.sebastian:
We have realized that outputs for 03A_study_prep_tuneCV are not the same as in the web page. However, we follow exactly the steps in the script, so probably the example has changed? We have also detected in...Reported by @rafael.sebastian:
We have realized that outputs for 03A_study_prep_tuneCV are not the same as in the web page. However, we follow exactly the steps in the script, so probably the example has changed? We have also detected in this example an incompatibility with the parameter Lumping. In the web page it gives two options True/False (it is read automatically from args), but in the example if you choose the option compareMassLumping, even if you set Lumping to False fails. We believe that the problem is due to the existence (even if set to False) of the variable Lumping in the arguments of the run.py. Could you check it out?