Move parameters from basic.par into runS1S2.py

tutorials/02_EP_tissue/X_fibre_orientation_reentry/basic.par

-# ionic setup
-num_imp_regions = 1 
-
-imp_region[0].im = COURTEMANCHE
-
-#electrical setup
-
-
-mass_lumping             = 1
-
-bidomain    =   0 
-spacedt     =   1.
-timedt      =   10.
-parab_solve =   1
-
-num_gregions             = 3
-
-
-gregion[0].num_IDs       = 1
-gregion[0].ID[0]         = 0
-
-
-

tutorials/02_EP_tissue/X_fibre_orientation_reentry/runS1S2.py

@@ -73,8 +73,8 @@ def jobID(args):
 
 
 def run_sim(args, job, subdirname, startstatef, s2time, angle, meshname, g_il, g_el):
-    cmd = tools.carp_cmd(os.path.join(EXAMPLE_DIR, 'basic.par'))
-    cmd += ['-meshname', meshname,
+    cmd = tools.carp_cmd()
+    cmd +=  ['-meshname', meshname,
             '-dt', 25,
             '-spacedt', 5,
             '-experiment', 0,
@@ -113,6 +113,16 @@ def run_sim(args, job, subdirname, startstatef, s2time, angle, meshname, g_il, g
             '-lats[0].measurand', 0,
             '-lats[0].mode', 0,
             '-lats[0].threshold', -40,
+            '-num_imp_regions', 1,
+            '-imp_region[0].im', 'COURTEMANCHE',
+            '-mass_lumping',1,
+            '-bidomain',0,
+            '-spacedt',1.,
+            '-timedt',10.,
+            '-parab_solve',1,
+            '-num_gregions',3,
+            '-gregion[0].num_IDs',1,
+            '-gregion[0].ID[0]',0,
             '-start_statef', startstatef]
     job.carp(cmd)